| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Adam Collin | Carlisle United | England | 57 | |
| 2 | James McKeown | Grimsby Town | Republic of Ireland | 50 | |
| 3 | Paul Farman | Stevenage | England | 50 | |
| 4 | Glenn Morris | Crawley Town | England | 49 | |
| 5 | Scott P Brown | Port Vale | England | 48 | |
| 6 | Conrad Logan | Mansfield Town | Republic of Ireland | 45 | |
| 7 | Liam Roberts | Walsall | England | 42 | |
| 8 | Will Jaaskelainen | Crewe Alexandra | Finland | 42 | |
| 9 | Alex Palmer | Plymouth Argyle | England | 41 | |
| 10 | Richard O'Donnell | Bradford City | England | 39 | |
| 11 | Dean Gerken | Colchester United | England | 38 | |
| 12 | Dimitar Mitov | Cambridge United | Bulgaria | 38 | |
| 13 | Rory Watson | Scunthorpe United | England | 37 | |
| 14 | Dean Brill | Leyton Orient | England | 35 | |
| 15 | David Cornell | Northampton Town | Wales | 35 | |
| 16 | Tom King | Newport County | Wales | 34 | |
| 17 | Owen Evans | Macclesfield Town | Wales | 33 | |
| 18 | Zeus de la Paz | Oldham Athletic | Curacao | 32 | |
| 19 | Barry Roche | Morecambe | Republic of Ireland | 29 | |
| 20 | Steven Benda | Swindon Town | Germany | 26 |
GC = Goals conceded