| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Yvon Mvogo | BSC Young Boys | Switzerland | 9 | |
| 2 | Sean O'Neill | Crusaders FC | Northern Ireland | 9 | |
| 3 | David Goresh | Hapoel Be`er Sheva | Israel | 7 | |
| 4 | Igor Semrinec | AS Trencin | Slovakia | 6 | |
| 5 | Aleksander Seliga | Olimpija Ljubljana | Slovenia | 6 | |
| 6 | Gary Rogers | Dundalk FC | Republic of Ireland | 6 | |
| 7 | Florin Nita | Steaua Bucharest | Romania | 6 | |
| 8 | Craig Gordon | Celtic | Scotland | 5 | |
| 9 | Jasper Cillessen | AFC Ajax | Netherlands | 5 | |
| 10 | Andreas Vaikla | IFK Norrkoping | Estonia | 5 | |
| 11 | Damir Ljuljanovic | FK Mladost Podgorica | Montenegro | 5 | |
| 12 | Raul Navas | Lincoln Red Imps | Spain | 5 | |
| 13 | Mattia Migani | Tre Penne | Italy | 5 | |
| 14 | Matus Kozacik | Viktoria Plzen | Slovakia | 4 | |
| 15 | Paul Harrison | The New Saints FC | England | 4 | |
| 16 | Pavel Londak | Rosenborg BK | Estonia | 4 | |
| 17 | Henry Bonello | Valletta | Malta | 4 | |
| 18 | Vladislav Stoyanov | Ludogorets Razgrad | Bulgaria | 4 | |
| 19 | Damir Kahriman | Red Star Belgrade | Serbia | 4 | |
| 20 | Alban Hoxha | FK Partizani Tirana | Albania | 4 |
GC = Goals conceded